pyenzyme.thinlayers.TL_Pysces module#

class pyenzyme.thinlayers.TL_Pysces.ThinLayerPysces(path, model_dir: str, measurement_ids: Union[str, list] = 'all', init_file: Optional[str] = None)[source]#

Bases: BaseThinLayer

optimize(method='leastsq')[source]#

Performs optimization of the given parameters

Parameters: method (str) – lmfit optimization algorithm, see https://lmfit.github.io/lmfit-py/fitting.html#choosing-different-fitting-methods

plot_fit()[source]#: Plots the simulation and data for the fitted parameters.

write()[source]#: Writes the estimated parameters to a copy of the EnzymeMLDocument