Ontology#
- class pyenzyme.enzymeml.core.ontology.DataTypes(value)[source]#
Bases:
str
,Enum
String enumeration used to assign replicate type ontologies
- ABSORPTION = 'abs'#
- BIOMASS = 'biomass'#
- CONCENTRATION = 'conc'#
- CONVERSION = 'conversion'#
- FEED = 'feed'#
- PEAK_AREA = 'peak-area'#
- class pyenzyme.enzymeml.core.ontology.EnzymeMLPart(value)[source]#
Bases:
str
,Enum
Mapping to identify where entities are stored in the EnzymeML model.
- DIMER = 'complex_dict'#
- ION = 'reactant_dict'#
- MACROMOLECULAR_COMPLEX = 'complex_dict'#
- PROTEIN = 'protein_dict'#
- PROTEIN_COMPLEX = 'complex_dict'#
- RADICAL = 'reactant_dict'#
- SMALL_MOLECULE = 'reactant_dict'#
- class pyenzyme.enzymeml.core.ontology.SBOTerm(value)[source]#
Bases:
str
,Enum
String enumeration used to assign ontologies derived from SBOTerms.
- ACID_BASE_REACTION = 'SBO:0000208'#
- BIOCHEMICAL_REACTION = 'SBO:0000176'#
- CATALYST = 'SBO:0000013'#
- CONFORMATIONAL_TRANSITION = 'SBO:0000181'#
- CONVERSION = 'SBO:0000182'#
- DEGRADATION = 'SBO:0000179'#
- DIMER = 'SBO:0000607'#
- DISSOCIATION = 'SBO:0000180'#
- ESSENTIAL_ACTIVATOR = 'SBO:0000461'#
- GENE = 'SBO:0000251'#
- INHIBITOR = 'SBO:0000020'#
- INTERACTOR = 'SBO:0000336'#
- ION = 'SBO:0000327'#
- IONISATION = 'SBO:0000209'#
- ISOMERISATION = 'SBO:0000377'#
- K_CAT = 'SBO:0000025'#
- K_M = 'SBO:0000027'#
- MACROMOLECULAR_COMPLEX = 'SBO:0000296'#
- MICHAELIS_MENTEN = 'SBO:0000028'#
- NON_COVALENT_BINDING = 'SBO:0000177'#
- NON_ESSENTIAL_ACTIVATOR = 'SBO:0000462'#
- POTENTIATOR = 'SBO:0000021'#
- PRODUCT = 'SBO:0000011'#
- PROTEIN = 'SBO:0000252'#
- PROTEIN_COMPLEX = 'SBO:0000297'#
- RADICAL = 'SBO:0000328'#
- REDOX_REACTION = 'SBO:0000200'#
- SMALL_MOLECULE = 'SBO:0000247'#
- SPONTANEOUS_REACTION = 'SBO:0000672'#
- SUBSTRATE = 'SBO:0000015'#
- V_MAX = 'SBO:0000186'#