Ontology#

class pyenzyme.enzymeml.core.ontology.DataTypes(value)[source]#

Bases: str, Enum

String enumeration used to assign replicate type ontologies

ABSORPTION = 'abs'#
BIOMASS = 'biomass'#
CONCENTRATION = 'conc'#
CONVERSION = 'conversion'#
FEED = 'feed'#
PEAK_AREA = 'peak-area'#
class pyenzyme.enzymeml.core.ontology.EnzymeMLPart(value)[source]#

Bases: str, Enum

Mapping to identify where entities are stored in the EnzymeML model.

DIMER = 'complex_dict'#
ION = 'reactant_dict'#
MACROMOLECULAR_COMPLEX = 'complex_dict'#
PROTEIN = 'protein_dict'#
PROTEIN_COMPLEX = 'complex_dict'#
RADICAL = 'reactant_dict'#
SMALL_MOLECULE = 'reactant_dict'#
classmethod entityFromSBOTerm(sbo_term: str) str[source]#
classmethod partFromSBOTerm(sbo_term: str) str[source]#
class pyenzyme.enzymeml.core.ontology.SBOTerm(value)[source]#

Bases: str, Enum

String enumeration used to assign ontologies derived from SBOTerms.

ACID_BASE_REACTION = 'SBO:0000208'#
BIOCHEMICAL_REACTION = 'SBO:0000176'#
CATALYST = 'SBO:0000013'#
CONFORMATIONAL_TRANSITION = 'SBO:0000181'#
CONVERSION = 'SBO:0000182'#
DEGRADATION = 'SBO:0000179'#
DIMER = 'SBO:0000607'#
DISSOCIATION = 'SBO:0000180'#
ESSENTIAL_ACTIVATOR = 'SBO:0000461'#
GENE = 'SBO:0000251'#
INHIBITOR = 'SBO:0000020'#
INTERACTOR = 'SBO:0000336'#
ION = 'SBO:0000327'#
IONISATION = 'SBO:0000209'#
ISOMERISATION = 'SBO:0000377'#
K_CAT = 'SBO:0000025'#
K_M = 'SBO:0000027'#
MACROMOLECULAR_COMPLEX = 'SBO:0000296'#
MICHAELIS_MENTEN = 'SBO:0000028'#
NON_COVALENT_BINDING = 'SBO:0000177'#
NON_ESSENTIAL_ACTIVATOR = 'SBO:0000462'#
POTENTIATOR = 'SBO:0000021'#
PRODUCT = 'SBO:0000011'#
PROTEIN = 'SBO:0000252'#
PROTEIN_COMPLEX = 'SBO:0000297'#
RADICAL = 'SBO:0000328'#
REDOX_REACTION = 'SBO:0000200'#
SMALL_MOLECULE = 'SBO:0000247'#
SPONTANEOUS_REACTION = 'SBO:0000672'#
SUBSTRATE = 'SBO:0000015'#
V_MAX = 'SBO:0000186'#